Please see the full list of my publications at my Google Scholar profile.

Selected Publications († shared authorship, * corresponding author)

• Shuming Liu^†, Xingcheng Lin^†, Bin Zhang*, “Chromatin fiber breaks into clutches under tension and crowding”, Nucleic Acids Res., 50, 17, pp 9738-9747, (2022)
• Shwetha Srinivasan^†, Raju Regmi^†, Xingcheng Lin, Steven D. Quinn, Wei He, Kermit L. Carraway, III, Matthew A. Coleman, Bin Zhang*, Gabriela S. Schlau-Cohen*, "Intracellular compaction induced by extracellular ligand-binding in epidermal growth factor receptor", Nature Communications, 13L3709, (2022)
• Xingcheng Lin^†, Yifeng Qi^†, Andrew Latham, Bin Zhang*, "Multiscale Modeling of Genome Organization with Maximum Entropy Optimization" J. Chem. Phys., 155, 010901, (2021)
• Xingcheng Lin, Rachel Leicher, Shixin Liu, Bin Zhang*, "Cooperative DNA Looping by PRC2 Complexes via Allosteric Communication", Nucleic Acids Res., 49, 11, pp 6238-6248, (2021)
• Xinqiang Ding^†, Xingcheng Lin^†, Bin Zhang*, “Stability and folding pathways of tetra-nucleosome from six-dimensional free energy surface”, Nature Communications, 12:1091, (2021)
• Xingcheng Lin^†, Jason T. George^†, Nicholas P. Schafer, Kevin Ng Chau, Cecilia Clementi, Jose N. Onuchic*, Herbert Levine*, "Rapid Assessment of T-Cell Receptor Specificity of the Immune Repertoire", Nature Computational Science, 1, 362-373, (2021)
• Rachel Leicher, Eva J. Ge^†, Xingcheng Lin^†, Matthew J. Reynolds^†, Thomas Walz, Bin Zhang*, Tom W. Muir, Shixin Liu*, "Single-molecule and in silico dissection of the interaction between Polycomb repressive complex 2 and chromatin", Proc. Natl. Acad. Sci. USA, 117, pp 30465-30475, (2020)
• Xingcheng Lin, Nicholas P. Schafer, Wei Lu, Shikai Jin, Xun Chen, Mingchen Chen, Jose N. Onuchic and Peter G. Wolynes*, "Forging tools for refining predicted protein structures", Proc. Natl. Acad. Sci. USA, 116, pp 9400-9409, (2019)
• Mingchen Chen^†, Xingcheng Lin^†,, Wei Lu^†, Nick P. Schafer,  Jose N. Onuchic and Peter G. Wolynes*, "Template-Guided Structure Prediction and Refinement Using an Optimized Folding Landscape Forcefield"  J. Chem. Theory Comput., 14, 11, pp 6102-6116, (2018)
• Xingcheng Lin, Jeffrey K. Noel, Qinghua Wang, Jianpeng Ma and Jose N. Onuchic*, "Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill", Proc. Natl. Acad. Sci. USA, 115, pp E7905-E7913, (2018)
• Xingcheng Lin, Susmita Roy, Mohit K. Jolly, Federico Bocci, Nick P. Schafer, Min-Yeh Tsai, Yihong Chen, Yanan He, Alexander Grishaev, Keith Weninger, John Orban,  Prakash Kulkarni, Govindan Rangarajan, Herbert Levine and Jose N. Onuchic*, "PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer", J. Mol. Biol., 430, pp 2422-2438, (2018)
• Mingchen Chen^†, Xingcheng Lin^†, Wei Lu, Jose N. Onuchic and Peter G. Wolynes*, "Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins", J. Phys. Chem. B, 121, pp 3473-3482, (2016)
• Xingcheng Lin^†, Jeffrey K. Noel^†, Qinghua Wang, Jianpeng Ma and Jose N. Onuchic*, "Lowered pH Leads to Fusion Peptide Release and a Highly-dynamic Intermediate of Influenza hemagglutinin", J. Phys. Chem. B, 120, pp 9654-9660, (2016)
• Mingchen Chen, Xingcheng Lin, Weihua Zheng, Jose N. Onuchic and Peter G. Wolynes*, "Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model (AAWSEM)", J. Phys. Chem. B, 120, pp 8557-8565, (2016)
• Xingcheng Lin^†, Nathan R. Eddy^†, Jeffrey K. Noel, Qinghua Wang, Jianpeng Ma and Jose N. Onuchic*, "Order and Disorder Control the Functional Rearrangement of Influenza Hemagglutinin", Proc. Natl. Acad. Sci. USA, 111, pp 12049-12054, (2014)